@@ -60,7 +60,7 @@ SomaticSniper requires that it be linked to an old version of samtools (v0.1.6).
As of commit [09ef624](https://github.com/genome/somatic-sniper/commit/09ef624e5bb275e0fd62396a14a878711e746cb9) or version [1.0.4](https://github.com/genome/somatic-sniper/releases/tag/v1.0.4), this should no longer be an issue and tarballs from github should function as intended. In earlier versions, SomaticSniper contained a git submodule called build-common. This submodule contains helper modules for cmake. If you downloaded the source as a tarball from github or forgot to do a recursive clone using git, then you will not have this submodule and will see cmake errors. If you are using git, we recommend you go back and use the --recursive option when cloning the SomaticSniper repository. If you cannot use git, follow the instructions below to remedy the situation.
1. Download the build-common module separately [here](https://github.com/genome/build-common/tarball/master).
2. Extract that tarball and rename the directory it creates to `build-commons`.
2. Extract that tarball and rename the directory it creates to `build-common`.
3. Replace the empty build-common subdirectory in the sniper directory with directory you just created.
