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je_synthesisBranch_2_headstitching_baseImprovements_minimalExpansion_noKmerExpansionAtAll
1b02d09d
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forcing the graph to only use 25mers and no expansion
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1月 03, 2020
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je_allowUnmergedIntervals
c6178563
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pushing the boulder up the hill because by morning it will have rolled back down again
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12月 20, 2019
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sh-sv-interpretation-flip-switch
41eeb0d4
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delete legacy tool DiscoverVariantsFromContigAlignmentsSAMSpark
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12月 18, 2019
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jts_variant_context_names_4570
2b1429cf
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Addressed more review comments.
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12月 18, 2019
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sh_3521
3306a4cd
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fix 3521
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12月 17, 2019
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kl_haplotype_caller_crashing_issue6292
449f74a7
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Updated incorrect examples in comments on Cigar alignment
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12月 12, 2019
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sl_denoise_norm
eb7e2825
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Normalize output of DenoiseReadCounts.
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12月 09, 2019
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vrr_dpad0
b3fe6504
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Addresses issue #5434 on inconsistent selection of reads for PL AD and DP calculations.
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12月 06, 2019
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ah_SO166_asfilter
78cc4c91
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wip
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12月 05, 2019
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genomicsdb_120_try
4e814362
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Keep GenomicsDBBCFCodec.java until we port GenomicsDBImportIntegrationTest to using VCFCodec
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12月 04, 2019
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lb_local_alleles
a49f5a05
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working
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12月 03, 2019
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je_pruningBasedOnNonUniqueKmerOccurances
88d79a93
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removing that maxEdgesSinceAccident code as its redundant with the edge recovery efforts
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12月 02, 2019
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je_synthesisBranch_3_headstitching_baseImprovements_minimalExpansion_andNonUniqueCounting
a04e5e47
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getting rid of max kmers since decision edge heurisitc as well as its not helpful
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12月 02, 2019
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je_synthesisBranch_2_headstitching_baseImprovements_minimalExpansion
cd76a1cc
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fixed a horrible issue that would cause null pointers on real data
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12月 02, 2019
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je_synthesisBranch_1_headstitching_baseImprovements
3d4f9bc0
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merged the two branches so hopefully both the expansion heuristics and the...
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12月 02, 2019
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as_gcnv_impose_common_priors
08f96eda
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Added new parameters to gCNV wrapper
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11月 25, 2019
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vrr_al_bug
47045a3e
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Abolish unfilled likelihoods and revamp VariantAnnotator (#6172)
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11月 25, 2019
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lb_skip_adam_registration_failures
dbe7ecad
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suppress adam registration failures
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11月 21, 2019
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ah_SO168_numtfilter
dca8d2eb
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cleanup
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11月 20, 2019
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lb_fix_spark_packaging
74d400b4
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fix scala 2.12 sparkJar
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11月 19, 2019
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