分支 · HPCSource / gatk · 极狐GitLab

jp_apply_skel

7811df41 · apply BQSR · 8月 13, 2015
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jp_start_with_mandatory_tests

687ea870 · cloud tests mandatory. Rename cloud_todo if broken. · 8月 14, 2015
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ek_craminttests_675

cf3f7aa0 · Undisabling test · 8月 19, 2015
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da_spark_integration_test

f1ea6282 · A little more · 8月 24, 2015
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dek_RenameSampleInVCF_test

8428de45 · Completed Integration Test · 8月 25, 2015
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jp_perf_markdups

d613a304 · option to disable opts, and bugfix · 8月 27, 2015
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ek_unmapped_766

1f31521d · Working on files · 8月 28, 2015
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ek_countreads_590

d827f925 · CountReads CRAM integration tests · 8月 28, 2015
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da_spark_tuning

dfbdb877 · Initial Spark dataflow commit, basic skeleton with some tests. · 9月 04, 2015
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da_spark_markdupes

32ba9776 · A first pass at Mark Dupes for Spark. · 9月 10, 2015
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da_playground2

ff54f49a · Finally got it running with reasonable path ordering. · 9月 20, 2015
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tw_dr_lb_spark_bqsr

864040a7 · Broadcast reference to all workers. (Removes one shuffle.) · 9月 21, 2015
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tw_dr_lb_spark_bqsr2

503dd185 · Add BaseRecalibratorSparkFnUnitTest. · 9月 22, 2015
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ul_broadcast_reference

1fa111bf · Added join strategy choice for Spark · 9月 22, 2015
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dr_lb_spark_test

2c42f124 · Reduce split size so BQSR runs. · 9月 25, 2015
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da_spark_integration

b5b02c4f · Another small delta. · 9月 27, 2015
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da_copy_deps

35aa8ed3 · Adding copyDeps to build.gradle so we easily run with a local spark cluster. · 9月 27, 2015
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da_spark_local

446676db · Making a unit test for Spark. · 9月 29, 2015
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jp_perf_apply2

5511195b · apply unfiltered · 9月 29, 2015
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tw_test

b1b7c1dd · Try RecalibrationTables combine no-op · 10月 02, 2015
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