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该项目从 https://github.com/broadinstitute/picard 镜像。拉取镜像更新于 3月 19, 2024。

tl_sortvcf_dict_validation_stringency

73884d55 · Don't error out unless STRICT · 1月 18, 2018
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yf_fix_bug_in_MV

ed59c2ea · - FindMV had issues when the PED files had founders included and also per-family vcf was requested. · 1月 13, 2018
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yf_allow_liftover_intervals_to_break_them

7a1454e0 · - responding to review comments. · 1月 12, 2018
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nh_eib_barcode_mismatch

b32a5f0e · Bug fix: ExtractIlluminaBarcodes should fail when the # of sample · 11月 17, 2017
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yf_add_contig_not_found_error_to_reorderSam

e29703f8 · - made more lenient when ALLOW....=true · 11月 11, 2017
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yf_make_fingerprinting_parallel

9664f2d0 · - Added multi-threading to the cross-checking code. · 10月 27, 2017
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yf_ls_CollectRrbsMetricsToSinglePassSamProgram

cfc13049 · doc: Fix the few mistakes in docs · 9月 29, 2017
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yf_speed_up_nocall

a1e9a9d7 · - fixed bug in Liftover pertaining to indels that straddle two "links" in a chain · 7月 11, 2017
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yf_fix_MBA_string

f81b4a38 · - fixing tests · 7月 02, 2017
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yf_add_mba_PG_record

f375de36 · - hmmm. stuck on how to deal with case where no PG input and we need to take... · 6月 09, 2017
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bt_make_SamFileTester_accessible

c8d6de54 · - removed a O(maxCoverage * nLoci) sanity test which significantly increases... · 12月 20, 2016
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lh_representative_read_tag_rebase_TEST

396b5275 · Tag reads in duplicate sets with the representative read and the duplicate set size · 11月 14, 2016
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lh_fingerprint

be63ce37 · new unit test for CrosscheckReadGroupFingerprintsTest.java · 11月 11, 2016
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ts_het_sensitivity

d306101b · one test written. But need conform to the new CollectWgsMetrics · 9月 13, 2016
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kt_SamToFastqTest_fix

cae7f301 · Adding informative error for SamToFastqTest. #496 · 7月 07, 2016
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yf_fix_variantcallingMEtrics_vis_a_vis_upstreamdeletions

a01b417c · - on my way to fixing VariantCallingMetrics vis-a-vis spanning deletions. · 6月 23, 2016
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lh_duplicate_set_index_tag

5e84ff77 · change to function/var names · 6月 22, 2016
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lh_ROI_on_MD_set_size_hist

7580418f · update to modeling the sampling with replacement, KL divergence assessed up to set size 6 · 6月 21, 2016
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lh_representative_read_tags2

4bd67529 · changed MD import statment3 · 6月 10, 2016
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lh_dup_set_size

cae331a1 · MD pairsort vs. read_pairs_examined · 6月 01, 2016
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