Version 0.2.7

- Fixed: reads wrongly sometimes wrongly spanned two chromosomes (issues
#23)
- Match score reduced and low quality split + short inv detection
enabeld for -x ont 

- Fix for long MD strings (segfault)
- Fix for LMP extension at chromosome borders (segfault)
- Dynamic linking is now default

- now reads from stdin if -q is skipped
- fixes for increasing stability
- updates and fixes for mapping ultra-long nanopore reads
(https://github.com/nickloman/massive-nanopore-silliness)
- Parameter --bam-fix added. Currently, BAM does not support reads with
> 64k cigar elements. When --bam-fix is set all reads with >64k Cigar
elements will be reported as unmapped to maintain compatibility with BAM

- Min residues check added to short read processing
- Parameter "--skip-write" added: If specified, ngmlr won't write the
reference index to disk
- Fix for non-deterministic MAPQ (Issue #13)
- Filtering changed to fix issue #12
- Primariy alignment flag fixed (issue #11)
- Set max length for read names to 500

- Compatibilty with (mini)conda
- SeqAn removed
- Switched from c++14 to c++11
- Option to switch off static build in CMake (-DSTATIC=OFF)

- Fixes for circular reference genomes
- Memory corruption fixed
- Filter for random short alignments added
- Dynamic programming approach for choosing best combination of mapped
segments (thanks to @bqminh)
- Alignment computation speedup with SSE instructions (thanks to
@smolkmo)
- Mapping quality computation updates
- Several memory leaks fixed
- Small duplication detection improved
- `--min-residues/-R` changed set to 25% (default). All reads that have
less than 25% mapped are reported as unmapped per default
- `--max-segments` added. Max number of segments reported for a single
read

- Docker image for building ngmlr added
- Gap decay parameter added
- Memory corruption fixed

*) MD tag fixed

Early beta release

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